PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g05420
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ARF
Protein Properties Length: 819aa    MW: 90910.8 Da    PI: 6.4825
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g05420genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.84.2e-23126227199
                EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                f+k+lt sd++++g +++p++ ae+       +++++ + +l  +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l++
  Tp7g05420 126 FCKTLTASDTSTHGGFSVPRRAAEKVfppldySLQPPAQ-ELLARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--RNEKNQLFL 222
                99***********************9*****97777664.9************************************************..5688889** PP

                EEE-S CS
         B3  95 kvfrk 99 
                +++r+
  Tp7g05420 223 GIRRA 227
                *9997 PP

2Auxin_resp110.71.5e-36252335183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aaha +t+s F+v+++Pras+seFv++++k+ ka+  +++svGmRf+m fete+ss rr++Gt++g+sdld+vrWpnS+Wrs+k
   Tp7g05420 252 AAHASATNSCFTVFFHPRASQSEFVIQLSKYIKAVFhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVK 335
                 799******************************986599******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.22E-47112255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-40119241IPR015300DNA-binding pseudobarrel domain
CDDcd100171.74E-20125221No hitNo description
SMARTSM010199.3E-23126228IPR003340B3 DNA binding domain
PROSITE profilePS5086312.28126228IPR003340B3 DNA binding domain
PfamPF023625.5E-21126227IPR003340B3 DNA binding domain
PfamPF065076.3E-32252335IPR010525Auxin response factor
SuperFamilySSF542771.24E-7707787No hitNo description
PfamPF023092.4E-7709798IPR033389AUX/IAA domain
PROSITE profilePS5174522.973713797IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 819 aa     Download sequence    Send to blast
MKLSTSGLVQ QGHEGEKCLN SELWHACAGP LVSLPSSGSR VVYFPQGHSE QVAATTNKEV  60
DGHIPNYPSL PPQLICQLHN VTMHADVETD EVYAQMTLQP LTPEEQKETF VPIELGIPSK  120
QPSNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDYSLQ PPAQELLARD LHDVEWKFRH  180
IFRGQPKRHL LTTGWSVFVS AKRLVAGDSV IFIRNEKNQL FLGIRRATRP QTTVPSSVLS  240
SDSMHIGLLA AAAHASATNS CFTVFFHPRA SQSEFVIQLS KYIKAVFHTR ISVGMRFRML  300
FETEESSVRR YMGTITGISD LDSVRWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT  360
FPMYPSLFPL RLKRPWHAGT SSLHDGRGEL GSGLTWLRGG GGEQQGLLPL NYPSVGLFPW  420
MQQRLDLPQL GTDNNQQYQA MLAAGLQNIG GGDPLRQQFV QLHEPHHQYL QQSASHNSDL  480
MLQQQQQQQA SRHHLHAQTQ IMSENLPQQN IRQEVSNQLA GQQQLQQPDQ NAYLNAFKMQ  540
NGHLQQWQHS DMPSPSFMKA DFTDSSNKFA TTATPLHQNS ASPGSGDSNN LLNFSITGQS  600
VLPEQLTTEG WSPKASNTFS EPLSMPQAYA GKSLALEPGN SNLNSSLFGV DPDSGLFLPS  660
TVPRFGSSSG DAEASPMSLT GSGFQNSLYS CMQDTTHELL HGAGQINPSN QTKNFVKVYK  720
SGSVGRSLDI SRFCSYNELR EELGKMFAIE GLLEDPLRSG WQLVFVDKEN DILLLGDDPW  780
ESFVNNVWYI KILSPEDVQQ MGDHGEGSGG SFPQNPTHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-154835640388Auxin response factor 5
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00033PBMTransfer from AT5G37020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0421960.0AF042196.1 Arabidopsis thaliana auxin response factor 8 (ARF8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010450468.10.0PREDICTED: auxin response factor 8 isoform X2
SwissprotQ9FGV10.0ARFH_ARATH; Auxin response factor 8
TrEMBLR0GF160.0R0GF16_9BRAS; Auxin response factor
STRINGAT5G37020.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13442894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0auxin response factor 8